RNAshapes: an integrated RNA analysis package based on abstract shapes. - Wikidata - wikimedia - TriplyDB

RNAshapes: an integrated RNA analysis package based on abstract shapes.

RNAshapes: an integrated RNA analysis package based on abstract shapes.

http://www.wikidata.org/entity/Q51958112

about

Complete probabilistic analysis of RNA shapes Genome-wide analysis of small RNA and novel MicroRNA discovery in human acute lymphoblastic leukemia based on extensive sequencing approach Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'RNase MRP and the RNA processing cascade in the eukaryotic ancestor Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences Small RNA expression and strain specificity in the rat Mammalian mirtron genes Evidence for a major role of antisense RNAs in cyanobacterial gene regulation Structural analysis of aligned RNAs RNA Movies 2: sequential animation of RNA secondary structures New insights from cluster analysis methods for RNA secondary structure prediction Structure Prediction: New Insights into Decrypting Long Noncoding RNAs An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure Unrooted unordered homeomorphic subtree alignment of RNA trees Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution Abundant 5S rRNA-like transcripts encoded by the mitochondrial genome in amoebozoa CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM Maximum expected accuracy structural neighbors of an RNA secondary structure A deep learning framework for modeling structural features of RNA-binding protein targets.Transcriptional regulation of translocator protein (Tspo) via a SINE B2-mediated natural antisense transcript in MA-10 Leydig cells.Discovery of hundreds of mirtrons in mouse and human small RNA data.Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032 Experimental characterization of Cis-acting elements important for translation and transcription in halophilic archaea Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.XML schemas for common bioinformatic data types and their application in workflow systems RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data.Bioinformatic tools for analysis of CLIP ribonucleoprotein data Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution.RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.Strategies for measuring evolutionary conservation of RNA secondary structures.GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries RNA STRAND: the RNA secondary structure and statistical analysis database.Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries.

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P2860

RNAshapes: an integrated RNA analysis package based on abstract shapes.

http://www.wikidata.org/entity/Q51958112

description

2005 nî lūn-bûn

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2005年の論文

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年學術文章

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2005年學術文章

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name

RNAshapes: an integrated RNA analysis package based on abstract shapes.

@en

RNAshapes: an integrated RNA analysis package based on abstract shapes.

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type

label

RNAshapes: an integrated RNA analysis package based on abstract shapes.

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RNAshapes: an integrated RNA analysis package based on abstract shapes.

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prefLabel

RNAshapes: an integrated RNA analysis package based on abstract shapes.

@en

RNAshapes: an integrated RNA analysis package based on abstract shapes.

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RNAshapes: an integrated RNA analysis package based on abstract shapes.

@en

P2093

Jens Reeder

http://www.w3.org/2001/XMLSchema#string

Marc Rehmsmeier

http://www.w3.org/2001/XMLSchema#string

Peter Steffen

http://www.w3.org/2001/XMLSchema#string

Robert Giegerich

http://www.w3.org/2001/XMLSchema#string

P2860

A comprehensive comparison of comparative RNA structure prediction approaches

Abstract shapes of RNA

A statistical sampling algorithm for RNA secondary structure prediction

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.

Complete suboptimal folding of RNA and the stability of secondary structures.

Fast folding and comparison of RNA secondary structures

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500-503

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10.1093/BIOINFORMATICS/BTK010

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4

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22

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2005-12-15T00:00:00Z

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16357029

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