Orthology prediction at scalable resolution by phylogenetic tree analysis
about
Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidaseOrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic rangesOrthology prediction methods: a quality assessment using curated protein familiesConceptual framework and pilot study to benchmark phylogenomic databases based on reference gene treeseggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotationsOrthoDB: the hierarchical catalog of eukaryotic orthologsInferring Orthologs: Open Questions and PerspectivesCombining chemoinformatics with bioinformatics: in silico prediction of bacterial flavor-forming pathways by a chemical systems biology approach "reverse pathway engineering"eggNOG: automated construction and annotation of orthologous groups of genesConstruction of an ortholog database using the semantic web technology for integrative analysis of genomic data.Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1.Algorithm of OMA for large-scale orthology inference.Phylogenetic and functional assessment of orthologs inference projects and methodsThe tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylomeHaMStR: profile hidden markov model based search for orthologs in ESTsThe proteolytic system of lactic acid bacteria revisited: a genomic comparisonHeterogeneous molecular processes among the causes of how sequence similarity scores can fail to recapitulate phylogeny.DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection.Hal: an automated pipeline for phylogenetic analyses of genomic dataComputational methods for Gene Orthology inferenceComparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exteriorOrthology detection combining clustering and synteny for very large datasetsGenomic characterization of the European sea bass Dicentrarchus labrax reveals the presence of a novel uncoupling protein (UCP) gene family member in the teleost fish lineage.Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class BacilliEfficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.Inferring hierarchical orthologous groups from orthologous gene pairs.Classification of the adenylation and acyl-transferase activity of NRPS and PKS systems using ensembles of substrate specific hidden Markov modelsEvolution of the insect desaturase gene family with an emphasis on social Hymenoptera.Impact of recurrent gene duplication on adaptation of plant genomes.Ortholog identification in the presence of domain architecture rearrangement.Positional orthology: putting genomic evolutionary relationships into contextA phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validationEnrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants.Revealing mammalian evolutionary relationships by comparative analysis of gene clustersA New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology.Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transferPractical and theoretical advances in predicting the function of a protein by its phylogenetic distribution.Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria.
P2860
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P2860
Orthology prediction at scalable resolution by phylogenetic tree analysis
description
2007 nî lūn-bûn
@nan
2007 թուականին հրատարակուած գիտական յօդուած
@hyw
2007 թվականին հրատարակված գիտական հոդված
@hy
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
name
Orthology prediction at scalable resolution by phylogenetic tree analysis
@ast
Orthology prediction at scalable resolution by phylogenetic tree analysis
@en
Orthology prediction at scalable resolution by phylogenetic tree analysis
@nl
type
label
Orthology prediction at scalable resolution by phylogenetic tree analysis
@ast
Orthology prediction at scalable resolution by phylogenetic tree analysis
@en
Orthology prediction at scalable resolution by phylogenetic tree analysis
@nl
prefLabel
Orthology prediction at scalable resolution by phylogenetic tree analysis
@ast
Orthology prediction at scalable resolution by phylogenetic tree analysis
@en
Orthology prediction at scalable resolution by phylogenetic tree analysis
@nl
P2860
P50
P356
P1433
P1476
Orthology prediction at scalable resolution by phylogenetic tree analysis
@en
P2093
René T J M van der Heijden
P2860
P2888
P356
10.1186/1471-2105-8-83
P407
P577
2007-01-01T00:00:00Z
P5875
P6179
1038722580