Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data. - Wikidata - awgldk - TriplyDB

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

http://www.wikidata.org/entity/Q33548170

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Identification and characterization of Hoxa9 binding sites in hematopoietic cells Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells dbl-1/TGF-β and daf-12/NHR Signaling Mediate Cell-Nonautonomous Effects of daf-16/FOXO on Starvation-Induced Developmental Arrest A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.The value of position-specific priors in motif discovery using MEME.A genome-integrated massively parallel reporter assay reveals DNA sequence determinants of cis-regulatory activity in neural cells Ubiquitination of hnRNPA1 by TRAF6 links chronic innate immune signaling with myelodysplasia.The histone demethylase KDM3A regulates the transcriptional program of the androgen receptor in prostate cancer cells.Hormone-dependent control of developmental timing through regulation of chromatin accessibility.Global mapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation.Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs.Differential motif enrichment analysis of paired ChIP-seq experiments Creating and validating cis-regulatory maps of tissue-specific gene expression regulation The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis MEME-ChIP: motif analysis of large DNA datasets iRegulon: from a gene list to a gene regulatory network using large motif and track collections.The long non-coding RNA Dali is an epigenetic regulator of neural differentiation.Genomic promoter occupancy of runt-related transcription factor RUNX2 in Osteosarcoma cells identifies genes involved in cell adhesion and motility.The MEME Suite.Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.Genome-Wide Analysis of the Lysine Biosynthesis Pathway Network during Maize Seed Development.Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis.Symmetrical Dose-Dependent DNA-Methylation Profiles in Children with Deletion or Duplication of 7q11.23 New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior Evaluating tools for transcription factor binding site prediction.Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.Inferring direct DNA binding from ChIP-seq.TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF.Elucidation of the calcineurin-Crz1 stress response transcriptional network in the human fungal pathogen Cryptococcus neoformans Bioinformatic Evaluation of Transcriptional Regulation of WNT Pathway Genes with reference to Diabetic Nephropathy Differential DNA Methylation Analysis without a Reference Genome A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network.Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells.Refinement of the androgen response element based on ChIP-Seq in androgen-insensitive and androgen-responsive prostate cancer cell lines.Simultaneous Pathway Activity Inference and Gene Expression Analysis Using RNA Sequencing.The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation.The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis.Genome-wide profiling reveals stimulus-specific functions of p53 during differentiation and DNA damage of human embryonic stem cells Epigenetic Signatures of Salivary Gland Inflammation in Sjögren's Syndrome.INsPeCT: INtegrative Platform for Cancer Transcriptomics.

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P2860

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

http://www.wikidata.org/entity/Q33548170

description

2010 nî lūn-bûn

@nan

2010 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

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Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

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Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

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type

label

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

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Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

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Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

@nl

prefLabel

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

@ast

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

@en

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

@nl

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BMC Bioinformatics

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Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data.

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Robert C McLeay

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P2860

Asap: a framework for over-representation statistics for transcription factor binding sites

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.

Transcriptional regulatory code of a eukaryotic genome.

High-resolution DNA-binding specificity analysis of yeast transcription factors.

Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.

Distinguishing direct versus indirect transcription factor-DNA interactions.

DNA binding sites: representation and discovery

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

Detection of functional DNA motifs via statistical over-representation

MEME SUITE: tools for motif discovery and searching

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1471-2105-11-165

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11

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Timothy L. Bailey

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2010-04-01T00:00:00Z

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