VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing - Test2 - elhamkhani - TriplyDB

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

http://www.wikidata.org/entity/Q24628978

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Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer Insights into the Dekkera bruxellensis genomic landscape: comparative genomics reveals variations in ploidy and nutrient utilisation potential amongst wine isolates Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives An extensive evaluation of read trimming effects on Illumina NGS data analysis Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Not All Next Generation Sequencing Diagnostics are Created Equal: Understanding the Nuances of Solid Tumor Assay Design for Somatic Mutation Detection Somatic mosaicism in the human genome Computational and bioinformatics frameworks for next-generation whole exome and genome sequencing Three-stage quality control strategies for DNA re-sequencing data Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges Bioinformatics for cancer immunology and immunotherapy Cancer evolution: mathematical models and computational inference High throughput sequencing approaches to mutation discovery in the mouse An advanced preclinical mouse model for acute myeloid leukemia using patients' cells of various genetic subgroups and in vivo bioluminescence imaging Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b.A common founding clone with TP53 and PTEN mutations gives rise to a concurrent germ cell tumor and acute megakaryoblastic leukemia SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution A New High-Throughput Approach to Genotype Ancient Human Gastrointestinal Parasites Activating HER2 mutations in HER2 gene amplification negative breast cancer Activating ESR1 mutations in hormone-resistant metastatic breast cancer.Clinical impact of clonal and subclonal TP53, SF3B1, BIRC3, NOTCH1, and ATM mutations in chronic lymphocytic leukemia.Feasibility of novel PPP1R15A and proposed ANXA11 single nucleotide polymorphisms as predictive markers for bevacizumab regimen in metastatic colorectal cancer.Overcoming mutation-based resistance to antiandrogens with rational drug design Advances in Faba Bean Genetics and Genomics Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application Computational characterisation of cancer molecular profiles derived using next generation sequencing Mutational landscape and significance across 12 major cancer types DNA replication error-induced extinction of diploid yeast Age-related mutations associated with clonal hematopoietic expansion and malignancies The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection Detectable clonal mosaicism in the human genome Postzygotic single-nucleotide mosaicisms in whole-genome sequences of clinically unremarkable individuals High-resolution mutational profiling suggests the genetic validity of glioblastoma patient-derived pre-clinical models Genetic aberrations in imatinib-resistant dermatofibrosarcoma protuberans revealed by whole genome sequencing Whole exome sequencing identifies novel recurrently mutated genes in patients with splenic marginal zone lymphoma Genetic heterogeneity of induced pluripotent stem cells: results from 24 clones derived from a single C57BL/6 mouse Clonal architectures and driver mutations in metastatic melanomas

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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

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2012 nî lūn-bûn

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Genome Research

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Christopher A Miller

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Daniel C Koboldt

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David E Larson

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Dong Shen

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Li Ding

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Ling Lin

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Michael D McLellan

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Qunyuan Zhang

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Richard K Wilson

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P2860

International network of cancer genome projects.

Targeted capture and massively parallel sequencing of 12 human exomes

Recurring mutations found by sequencing an acute myeloid leukemia genome

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

Integrated genomic analyses of ovarian carcinoma

The UCSC Genome Browser Database

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

Genome remodelling in a basal-like breast cancer metastasis and xenograft

Involvement of Brca2 in DNA repair

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154820

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10.1101/GR.129684.111

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3

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22

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2012-03-01T00:00:00Z

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221801621

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22300766

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3290792

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