Deconvolving the recognition of DNA shape from sequence.
about
Homeodomain proteins: an updateExpansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage CompensationBuilding accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCETransversions have larger regulatory effects than transitions.Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.The role of structural parameters in DNA cyclizationThe TALE face of Hox proteins in animal evolutionA widespread role of the motif environment in transcription factor binding across diverse protein familiesChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.Exploring comprehensive within-motif dependence of transcription factor binding in Escherichia coli.A human transcription factor in search mode.Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins.Mechanisms of Specificity for Hox Factor Activity.How motif environment influences transcription factor search dynamics: Finding a needle in a haystackSequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.New Insights into Cooperative Binding of Homeodomain Transcription Factors PREP1 and PBX1 to DNA.Transcription factor family-specific DNA shape readout revealed by quantitative specificity models.Coming to terms with chromatin structure.DNA Motif Databases and Their Uses.DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.Mocap: large-scale inference of transcription factor binding sites from chromatin accessibilityEver-Changing Landscapes: Transcriptional Enhancers in Development and Evolution.Transcription factor-DNA binding: beyond binding site motifs.PionX sites mark the X chromosome for dosage compensation.DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo.Predicting Variation of DNA Shape Preferences in Protein-DNA Interaction in Cancer Cells with a New Biophysical Model.Roles of cofactors and chromatin accessibility in Hox protein target specificity.Decomposing protein-DNA binding and recognition using simplified protein models.Cognitive neuroepigenetics: the next evolution in our understanding of the molecular mechanisms underlying learning and memory?Identification of Human Lineage-Specific Transcriptional Coregulators Enabled by a Glossary of Binding Modules and Tunable Genomic Backgrounds.Control of virulence gene transcription by indirect readout in Vibrio cholerae and Salmonella enterica serovar Typhimurium.Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding.Exposing the secrets of sex determination.Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding.Natural variation in stochastic photoreceptor specification and color preference in Drosophila.SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site.Internal Motions of Basic Side Chains of the Antennapedia Homeodomain in the Free and DNA-Bound States.Using competition assays to quantitatively model cooperative binding by transcription factors and other ligands.
P2860
Q26783539-ACBE6377-662D-4D1C-B925-79A8F12E8E6FQ28552633-E117B240-BDF2-4108-8848-8CC5B54BB3FCQ31033869-90D669F9-4DA0-4599-9BDC-9F8DDCC601B8Q33709223-31C2D3F0-FF70-4535-97F4-E4E47167941AQ35872726-3970B4E9-2DDA-440F-A418-10F54D69A3C9Q35914822-4D37F07C-6A78-4CC7-99E8-7E64B3CAFEEFQ35964142-2614D57A-64EF-4291-8F79-55E57E07A336Q36032482-86F39143-506A-4D5E-A33F-832517C60195Q36200857-5E95E8DF-00B9-435F-A1E7-2B54FDEEF124Q36305857-2291C469-0AE1-401B-8C32-00CB80C11770Q36443267-57CD6ABE-7541-4F51-9D91-55D356BCB059Q36466161-0389D513-C15A-4DA7-B917-4ABD655AD3EAQ36923531-7E4D0993-D0A2-4EDD-8BF7-300F2847F552Q37213980-00BC493D-966B-4920-879A-948945C5749EQ37255786-AAE79CAA-E433-4A22-8E4A-CD383D2B89F4Q37260808-FE48FF7F-FEC2-4B3C-971B-653BAB487605Q37589675-08168055-7534-4908-A99F-8A22F275904AQ37668785-E861ECC4-6116-459F-AC4F-37EC6F04DB73Q38557052-DE276923-263A-4829-B531-405856A4E813Q38579661-77BF4904-C7DE-4188-AA73-569F2536C09AQ38765570-D6EC754C-B041-4EED-9346-32A0D2E97C18Q38882162-BFD45945-BBA5-4A5D-8B2B-7E16F77F1DCEQ39013266-EB6736DF-BDCE-4452-B9DC-E2A67494F004Q39209455-E8070EB2-D966-4C50-9D96-5ABCC5CB6B88Q39436133-70979B87-AE88-4D51-AB1A-855E82D4ACCEQ39951426-6B9B640F-7B92-4B90-8811-C17119E6A5C9Q41670987-20EEEDC4-5950-47C6-88F9-ABDBFEB23218Q41673531-C2390595-3087-4D07-BC99-871A78DAD38EQ41827311-7F3DFB8F-CFB2-4ED6-BFB6-AD02C72EDD29Q41905715-F7B1E5BA-5013-485D-9AA4-79E454A51C59Q42373878-E848455F-7BE0-4D68-9136-4AA13502AD6DQ42693822-B0D0E594-63EF-420F-9D82-CF59C41F0CB5Q44448553-88DEF665-3792-42D1-83C9-25802A9CCC60Q45944885-550C9CB4-2D87-40F8-BE59-993054CA55E2Q46744580-6A1E760C-C71C-4050-A228-5E8062120451Q46912958-2651ECAD-ED94-400B-964C-FE600571A3D5Q47096553-9D7E6285-5AB6-4D7F-A7FA-8B1FBA553669Q47590465-22C44871-18E4-41FD-9B5C-40B7F5ABE1EFQ47633868-CAA34052-AE7B-4575-A8CE-82AE34D27F9BQ47739443-F807B3C8-1AF7-4A46-9A26-1F1842092FDD
P2860
Deconvolving the recognition of DNA shape from sequence.
description
2015 nî lūn-bûn
@nan
2015 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2015 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2015年の論文
@ja
2015年論文
@yue
2015年論文
@zh-hant
2015年論文
@zh-hk
2015年論文
@zh-mo
2015年論文
@zh-tw
2015年论文
@wuu
name
Deconvolving the recognition of DNA shape from sequence.
@ast
Deconvolving the recognition of DNA shape from sequence.
@en
Deconvolving the recognition of DNA shape from sequence.
@nl
type
label
Deconvolving the recognition of DNA shape from sequence.
@ast
Deconvolving the recognition of DNA shape from sequence.
@en
Deconvolving the recognition of DNA shape from sequence.
@nl
prefLabel
Deconvolving the recognition of DNA shape from sequence.
@ast
Deconvolving the recognition of DNA shape from sequence.
@en
Deconvolving the recognition of DNA shape from sequence.
@nl
P2093
P2860
P1433
P1476
Deconvolving the recognition of DNA shape from sequence.
@en
P2093
Harmen J Bussemaker
Matthew Slattery
Namiko Abe
Richard S Mann
Tianyin Zhou
P2860
P304
P356
10.1016/J.CELL.2015.02.008
P407
P577
2015-04-02T00:00:00Z