Deconvolving the recognition of DNA shape from sequence. - Test2 - elhamkhani - TriplyDB

Deconvolving the recognition of DNA shape from sequence.

Deconvolving the recognition of DNA shape from sequence.

http://www.wikidata.org/entity/Q34470344

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Homeodomain proteins: an update Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE Transversions have larger regulatory effects than transitions.Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.The role of structural parameters in DNA cyclization The TALE face of Hox proteins in animal evolution A widespread role of the motif environment in transcription factor binding across diverse protein families ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.Exploring comprehensive within-motif dependence of transcription factor binding in Escherichia coli.A human transcription factor in search mode.Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins.Mechanisms of Specificity for Hox Factor Activity.How motif environment influences transcription factor search dynamics: Finding a needle in a haystack Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.New Insights into Cooperative Binding of Homeodomain Transcription Factors PREP1 and PBX1 to DNA.Transcription factor family-specific DNA shape readout revealed by quantitative specificity models.Coming to terms with chromatin structure.DNA Motif Databases and Their Uses.DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution.Transcription factor-DNA binding: beyond binding site motifs.PionX sites mark the X chromosome for dosage compensation.DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo.Predicting Variation of DNA Shape Preferences in Protein-DNA Interaction in Cancer Cells with a New Biophysical Model.Roles of cofactors and chromatin accessibility in Hox protein target specificity.Decomposing protein-DNA binding and recognition using simplified protein models.Cognitive neuroepigenetics: the next evolution in our understanding of the molecular mechanisms underlying learning and memory?Identification of Human Lineage-Specific Transcriptional Coregulators Enabled by a Glossary of Binding Modules and Tunable Genomic Backgrounds.Control of virulence gene transcription by indirect readout in Vibrio cholerae and Salmonella enterica serovar Typhimurium.Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding.Exposing the secrets of sex determination.Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding.Natural variation in stochastic photoreceptor specification and color preference in Drosophila.SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site.Internal Motions of Basic Side Chains of the Antennapedia Homeodomain in the Free and DNA-Bound States.Using competition assays to quantitatively model cooperative binding by transcription factors and other ligands.

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Deconvolving the recognition of DNA shape from sequence.

http://www.wikidata.org/entity/Q34470344

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2015 nî lūn-bûn

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2015 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2015 թվականի ապրիլին հրատարակված գիտական հոդված

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2015年の論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年论文

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name

Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Deconvolving the recognition of DNA shape from sequence.

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Harmen J Bussemaker

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Iris Dror

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Lin Yang

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Matthew Slattery

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Namiko Abe

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Remo Rohs

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Richard S Mann

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Tianyin Zhou

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P2860

FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

The role of DNA shape in protein-DNA recognition

Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs

Mechanism of Origin DNA Recognition and Assembly of an Initiator-Helicase Complex by SV40 Large Tumor Antigen

DNA-binding specificities of human transcription factors

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

Improved predictions of transcription factor binding sites using physicochemical features of DNA.

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