Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data. - Test2 - elhamkhani - TriplyDB

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

http://www.wikidata.org/entity/Q33515789

about

Evaluation of algorithm performance in ChIP-seq peak detection ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes DNA-binding motif and target genes of the imprinted transcription factor PEG3 Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros Uncovering transcription factor modules using one- and three-dimensional analyses Bipartite recognition of DNA by TCF/Pangolin is remarkably flexible and contributes to transcriptional responsiveness and tissue specificity of wingless signaling Wnt-signalling pathways and microRNAs network in carcinogenesis: experimental and bioinformatics approaches Autophagy driven by a master regulator of hematopoiesis Misregulation of Alternative Splicing in a Mouse Model of Rett Syndrome Features that define the best ChIP-seq peak calling algorithms A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data.A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data.PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.Modeling transcriptional networks regulating secondary growth and wood formation in forest trees.Using ChIP-seq technology to identify targets of zinc finger transcription factors.Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes OccuPeak: ChIP-Seq peak calling based on internal background modelling seqMINER: an integrated ChIP-seq data interpretation platform.WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with ERalpha.PeakRanger: a cloud-enabled peak caller for ChIP-seq data.Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.Using ChIP-seq technology to generate high-resolution profiles of histone modifications Epigenetically coordinated GATA2 binding is necessary for endothelium-specific endomucin expression.Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data.A novel role for the Pol I transcription factor UBTF in maintaining genome stability through the regulation of highly transcribed Pol II genes.Genome-wide mapping of Sox6 binding sites in skeletal muscle reveals both direct and indirect regulation of muscle terminal differentiation by Sox6.SGLT1, a novel cardiac glucose transporter, mediates increased glucose uptake in PRKAG2 cardiomyopathy Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.Identification of {beta}-catenin binding regions in colon cancer cells using ChIP-Seq.USF binding sequences from the HS4 insulator element impose early replication timing on a vertebrate replicator.Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation.Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages Functional annotation of colon cancer risk SNPs.

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P2860

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

http://www.wikidata.org/entity/Q33515789

description

2009 nî lūn-bûn

@nan

2009 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

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2009年论文

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name

Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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type

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Nucleic Acids Research

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Sole-Search: an integrated ana ...... nnotation using ChIP-seq data.

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Alina R Cao

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Charles M Nicolet

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Henriette O'Geen

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Ian Korf

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Kimberly R Blahnik

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Lei Dou

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Sushma Iyengar

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Timothy McPhillips

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Xiaoqin Xu

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P2860

Model-based analysis of ChIP-Seq (MACS)

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs

Interaction of phosphorylated c-Jun with TCF4 regulates intestinal cancer development

Myc-Max heterodimers activate a DEAD box gene and interact with multiple E box-related sites in vivo

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

Genome-wide mapping of in vivo protein-DNA interactions

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e13

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scholarly article

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10.1093/NAR/GKP1012

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3

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38

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Bertram Ludäscher

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2009-11-11T00:00:00Z

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38083225

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19906703

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2817454

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