Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis - Test2 - elhamkhani - TriplyDB

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

http://www.wikidata.org/entity/Q33717033

about

5'-UTR RNA G-quadruplexes: translation regulation and targeting Understanding the Functions of Long Non-Coding RNAs through Their Higher-Order Structures RNA structural analysis by evolving SHAPE chemistry Emerging applications of read profiles towards the functional annotation of the genome Primer-dependent and primer-independent initiation of double stranded RNA synthesis by purified Arabidopsis RNA-dependent RNA polymerases RDR2 and RDR6 The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates MicroRNA discovery by similarity search to a database of RNA-seq profiles SAVoR: a server for sequencing annotation and visualization of RNA structures The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes.Computational analysis of RNA structures with chemical probing data.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome Long non-coding RNAs: a novel endogenous source for the generation of Dicer-like 1-dependent small RNAs in Arabidopsis thaliana.Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.SoMART: a web server for plant miRNA, tasiRNA and target gene analysis.How to find RNA thermometers.RDR2 partially antagonizes the production of RDR6-dependent siRNA in sense transgene-mediated PTGS Evolution and functional diversification of MIRNA genes.ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome.Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis.Rational experiment design for sequencing-based RNA structure mapping.The role of the Arabidopsis Exosome in siRNA-independent silencing of heterochromatic loci.Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing.Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments.High-throughput approaches for plant epigenomic studies Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis.Environmental RNAi in herbivorous insects.The Functions of RNA-Dependent RNA Polymerases in Arabidopsis OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.Role of mRNA structure in the control of protein folding The use of high-throughput sequencing methods for plant microRNA research.Transcriptome-Wide Discovery of PASRs (Promoter-Associated Small RNAs) and TASRs (Terminus-Associated Small RNAs) in Arabidopsis thaliana.Intronic regions of plant genes potentially encode RDR (RNA-dependent RNA polymerase)-dependent small RNAs.An RNA Mapping DataBase for curating RNA structure mapping experiments.High-throughput identification of long-range regulatory elements and their target promoters in the human genome Arabidopsis non-coding RNA regulation in abiotic stress responses.RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes.

P2860

Q24612042-88105B73-4F41-49A9-B63C-7901B38A34B5 Q26747692-1AB3312D-021F-4C59-9FBA-E74BEF4E9AD2 Q26822237-1E35100C-7FB2-46B6-BED9-C1EA75A5735C Q28084490-268358C3-3759-4B79-AF43-64500EE1F254 Q28544782-88D2AAAC-D199-4296-9748-FD334D17437A Q28658245-0B53C38E-B6C2-4DE3-AED6-EBA42DA75F97 Q28679161-4A1C92E9-13EA-41EB-826D-AB082BC8E441 Q28727279-BBE752DC-3782-4258-9418-61B4C39BF37C Q30578058-31AC983C-B8E1-4F11-8ADB-7AD023F3F415 Q30893791-C5AC24C3-8E1D-4065-987C-57EDA3FA8107 Q31031522-77F9F122-835A-4E47-884E-393006987943 Q31154693-92F2D097-C07E-4606-A6FF-6C2F9276274A Q33741954-D96DBBCB-2292-4C93-8129-2BE0949A1583 Q33823015-720F59A3-C7CB-42E5-BD3A-D4E7B34B2FF7 Q33838359-D9627E14-DDFB-4E5E-B41F-E84133098E9C Q34030344-9CE09382-F0E2-4C1E-B3FF-C09A790D7648 Q34042230-0BC4A02A-5E80-49E2-B316-81CAC1794951 Q34126644-E82B8A80-5951-46A8-B951-F99662DBEC00 Q34164272-A69AC78D-E4C6-4A13-A2A1-5316D6115648 Q34211331-3335045C-8EA3-45CE-B0AF-11B45580E63D Q34476386-B9815633-32A1-470F-A079-F9A4F6ED9203 Q34530771-0DC1B9B3-B6E5-4CCA-B659-F9E1856082FF Q34547182-E3B14F99-9A0B-493A-A79B-F6D0D5F556E4 Q34650027-4290DF0D-C019-454C-9D8D-A542253C6103 Q34655867-5335D08D-B41E-4D52-BD74-B725C8EDF701 Q34662492-A641E002-DB1A-4267-9115-4B9335723F3F Q35037464-0062A041-4629-4E9A-9CF9-706E854EC2E1 Q35042967-7A2CC3B4-B941-46EA-BF9D-1DABEA23C91C Q35075061-3517BF90-D280-4954-907E-41D27B0E8F0E Q35534958-B46BF85D-57B7-422C-9AC2-06F30E051F16 Q35710565-D8AD42EC-8D83-43A7-84DE-EAFFE3F46BC7 Q35844825-ABA32014-2543-4A6F-B2F9-C2D79DB243FB Q36088168-8B216C64-5160-4B00-9336-6DC96AC32909 Q36191761-0CAB7617-E244-44CA-B2E4-1CA862E16693 Q36238632-35CCF34A-6617-41D4-8381-59E840640992 Q36346505-F3CA42C1-665F-4B84-82EE-5392BC5A6CC3 Q36393804-B40BC0EF-2833-4267-A8D3-4AD4ED619FAB Q36814240-43E0301F-03CD-4E7E-9BF4-804A73C49045 Q37375499-20A0848E-B500-4243-B7BA-D4C63776DBB9 Q37394871-15F46DC1-75AC-4490-AC12-E1C030A16BA9

P2860

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

http://www.wikidata.org/entity/Q33717033

description

2010 nî lūn-bûn

@nan

2010 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի սեպտեմբերին հրատարակված գիտական հոդված

@hy

2010年の論文

@ja

2010年学术文章

@wuu

2010年学术文章

@zh-cn

2010年学术文章

@zh-hans

2010年学术文章

@zh-my

2010年学术文章

@zh-sg

2010年學術文章

@yue

name

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@ast

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@en

type

label

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@ast

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@en

prefLabel

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@ast

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@en

P1433

Q33717033-A8C91A1E-B25A-405B-AA96-703321B8B4FE

P1476

Q33717033-BBF92603-BFB7-4C1B-A019-E12DB80AB1AB

P2093

Q33717033-34F0F064-5ACA-4495-8585-78F7BE7B522D

Q33717033-56FEACEA-C012-4107-B256-897CF0352F91

Q33717033-5FB339C5-3938-481A-B849-2EBF13E4BED1

Q33717033-6061C3E7-2D6A-4739-BE23-E02D0E624D64

Q33717033-94EF193E-FA56-4247-8EF1-4BBC81DB590B

Q33717033-9D25A0C1-CF61-4300-A0A0-C9D6E6EF9359

Q33717033-E4795A2F-51A8-4F16-B484-A4CA32AC7CF1

P2860

Q33717033-095093B3-93D5-4FBA-A29A-4DE80C13587E

Q33717033-105A080B-FFA7-4AD0-BD36-27B1465ABFC6

Q33717033-10AFB4CC-3934-4592-AF21-4CFBF432A5B1

Q33717033-14688E69-967F-4E37-BD7B-3B3AEAA78DCB

Q33717033-1CAC38C6-BABE-4615-9074-3F1C725FECFB

Q33717033-1CDED4F5-C1FB-4915-9824-69724A8A46E0

Q33717033-1D4B46E4-1011-4199-8DE8-6ED908FE0133

Q33717033-1F9B6819-FF63-4E57-8F0F-F9C3ED0795DB

Q33717033-243AAFD6-9108-4DE7-A343-EDC901759FA4

Q33717033-2E202666-7D20-48F6-B882-20E785AFE74E

P304

Q33717033-2C385902-8C29-4729-A16C-CBBB95243FF3

P31

Q33717033-D0B50FF9-81A9-4042-9BD9-4A1097A39312

P356

Q33717033-EA2B1293-C000-44AA-8BE0-74DC7D26531B

P433

Q33717033-4A071BB0-8A75-4201-B166-9ECED7D11E1F

P478

Q33717033-22383A4A-9835-47A8-BBE0-6CBDA62310B6

P50

Q33717033-4CC04A63-4258-4F03-9CD3-52BBD9845475

Q33717033-6BE5ADB0-7E2F-42E9-92FD-0F8E6F6B5E32

P577

Q33717033-879C119F-0F30-49C4-B4CF-7ACF729F7CE5

P5875

Q33717033-A0388227-F2D9-4FDA-B211-4FEE025EF149

P698

Q33717033-F7DD014D-9137-472A-BFEC-C54143B558B5

P932

Q33717033-9E95D937-2264-44F4-AF59-C470B0539CA9

P356

JOURNAL.PGEN.1001141

P1433

P1476

Genome-wide double-stranded RN ...... ase-paired RNAs in Arabidopsis

@en

P2093

Brian D Gregory

http://www.w3.org/2001/XMLSchema#string

Isabelle Dragomir

http://www.w3.org/2001/XMLSchema#string

Jamie Yang

http://www.w3.org/2001/XMLSchema#string

Kajia Cao

http://www.w3.org/2001/XMLSchema#string

Li-San Wang

http://www.w3.org/2001/XMLSchema#string

Paul Ryvkin

http://www.w3.org/2001/XMLSchema#string

Qi Zheng

http://www.w3.org/2001/XMLSchema#string

P2860

Initial sequencing and comparative analysis of the mouse genome

An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA

A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis

SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

Genome-wide identification of human functional DNA using a neutral indel model

A model for the study of ligand binding to the ribosomal RNA helix h44

Origins and Mechanisms of miRNAs and siRNAs

MicroRNAs: genomics, biogenesis, mechanism, and function

P304

e1001141

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1371/JOURNAL.PGEN.1001141

http://www.w3.org/2001/XMLSchema#string

P433

9

http://www.w3.org/2001/XMLSchema#string

P478

6

http://www.w3.org/2001/XMLSchema#string

P50

Otto Valladares

P577

2010-09-30T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

47404664

http://www.w3.org/2001/XMLSchema#string

P698

20941385

http://www.w3.org/2001/XMLSchema#string

P932

2947979

http://www.w3.org/2001/XMLSchema#string