Sampling bottlenecks in de novo protein structure prediction
about
Protein 3D structure computed from evolutionary sequence variationPrinciples and Overview of Sampling Methods for Modeling Macromolecular Structure and DynamicsImprovements to robotics-inspired conformational sampling in rosettaProtein structure prediction from sequence variationEfficient sampling in fragment-based protein structure prediction using an estimation of distribution algorithm.CASP10 results compared to those of previous CASP experimentsAtomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.Improving fragment quality for de novo structure prediction.Assessment of the utility of contact-based restraints in accelerating the prediction of protein structure using molecular dynamics simulations.De novo protein conformational sampling using a probabilistic graphical model.Effective protein conformational sampling based on predicted torsion angles.Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction.Toward a detailed understanding of search trajectories in fragment assembly approaches to protein structure predictionGenerating, Maintaining, and Exploiting Diversity in a Memetic Algorithm for Protein Structure Prediction.Feature space resampling for protein conformational search.UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic samplingQuality Assessment of Predicted Protein Models Using Energies Calculated by the Fragment Molecular Orbital Method.Balancing exploration and exploitation in population-based sampling improves fragment-based de novo protein structure prediction.Trends in template/fragment-free protein structure predictionThe energy computation paradox and ab initio protein foldingComputed structures of point deletion mutants and their enzymatic activities.Refinement of protein structure homology models via long, all-atom molecular dynamics simulations.A probabilistic fragment-based protein structure prediction algorithm.Error-estimation-guided rebuilding of de novo models increases the success rate of ab initio phasing.Protein Structure Refinement through Structure Selection and Averaging from Molecular Dynamics Ensembles.Validating a Coarse-Grained Potential Energy Function through Protein Loop Modelling.Generalized fragment picking in Rosetta: design, protocols and applicationsFrom laptop to benchtop to bedside: structure-based drug design on protein targets.An enumerative stepwise ansatz enables atomic-accuracy RNA loop modelingGenomes to hits in silico - a country path today, a highway tomorrow: a case study of chikungunya.Progress in the de novo design of structured peptoid protein mimics.Monte Carlo loop refinement and virtual screening of the thyroid-stimulating hormone receptor transmembrane domain.Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment picker.Finding the needle in the haystack: towards solving the protein-folding problem computationally.Time-averaged order parameter restraints in molecular dynamics simulations.A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models.Is protein folding problem really a NP-complete one? First investigations.Improved fragment-based protein structure prediction by redesign of search heuristics
P2860
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P2860
Sampling bottlenecks in de novo protein structure prediction
description
2009 nî lūn-bûn
@nan
2009 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
Sampling bottlenecks in de novo protein structure prediction
@ast
Sampling bottlenecks in de novo protein structure prediction
@en
type
label
Sampling bottlenecks in de novo protein structure prediction
@ast
Sampling bottlenecks in de novo protein structure prediction
@en
prefLabel
Sampling bottlenecks in de novo protein structure prediction
@ast
Sampling bottlenecks in de novo protein structure prediction
@en
P2093
P2860
P1476
Sampling bottlenecks in de novo protein structure prediction
@en
P2093
David E Kim
Philip Bradley
P2860
P304
P356
10.1016/J.JMB.2009.07.063
P407
P50
P577
2009-07-28T00:00:00Z