A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
about
Targeted next-generation sequencing of head and neck squamous cell carcinoma identifies novel genetic alterations in HPV+ and HPV- tumorsComputational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challengesStructural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectivesStatistical Inference in Hidden Markov Models Using k-Segment ConstraintsIdentification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairsUnraveling the clonal hierarchy of somatic genomic aberrations.Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples.DeMix: deconvolution for mixed cancer transcriptomes using raw measured data.THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing dataTITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.RVD2: an ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing data.A Method for Checking Genomic Integrity in Cultured Cell Lines from SNP Genotyping Data.CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing dataWhole-genome sequencing of bladder cancers reveals somatic CDKN1A mutations and clinicopathological associations with mutation burden.Virmid: accurate detection of somatic mutations with sample impurity inferenceHigh-definition reconstruction of clonal composition in cancerDeconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity.Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrationsAbsolute quantification of somatic DNA alterations in human cancerComparison of methods to detect copy number alterations in cancer using simulated and real genotyping data.A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data.PyClone: statistical inference of clonal population structure in cancer.qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profilesFast detection of de novo copy number variants from SNP arrays for case-parent trios.Tolerance of whole-genome doubling propagates chromosomal instability and accelerates cancer genome evolution.Estimation of the fraction of cancer cells in a tumor DNA sample using DNA methylationBCRgt: a Bayesian cluster regression-based genotyping algorithm for the samples with copy number alterations.ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.Multiple mechanisms of MYCN dysregulation in Wilms tumour.BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumorWild-type APC predicts poor prognosis in microsatellite-stable proximal colon cancerIntegration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort studyThe Subclonal Architecture of Metastatic Breast Cancer: Results from a Prospective Community-Based Rapid Autopsy Program "CASCADE".Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancerQuantification of subclonal distributions of recurrent genomic aberrations in paired pre-treatment and relapse samples from patients with B-cell chronic lymphocytic leukemia.Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis.Haplotype-based profiling of subtle allelic imbalance with SNP arrays.Analysis of colorectal cancers in British Bangladeshi identifies early onset, frequent mucinous histotype and a high prevalence of RBFOX1 deletion.The mutational landscape of adenoid cystic carcinoma
P2860
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P2860
A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
description
2010 nî lūn-bûn
@nan
2010 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
A statistical approach for det ...... e polymorphism genotyping data
@ast
A statistical approach for det ...... e polymorphism genotyping data
@en
type
label
A statistical approach for det ...... e polymorphism genotyping data
@ast
A statistical approach for det ...... e polymorphism genotyping data
@en
prefLabel
A statistical approach for det ...... e polymorphism genotyping data
@ast
A statistical approach for det ...... e polymorphism genotyping data
@en
P2093
P2860
P50
P356
P1433
P1476
A statistical approach for det ...... e polymorphism genotyping data
@en
P2093
Dmitri Mouradov
Ghazala Mirza
Graham Steers
Jiannis Ragoussis
P2860
P2888
P356
10.1186/GB-2010-11-9-R92
P577
2010-09-21T00:00:00Z