Understanding the errors of SHAPE-directed RNA structure modeling.
about
RNA design rules from a massive open laboratoryIntegrating chemical footprinting data into RNA secondary structure predictionTranscending the prediction paradigm: novel applications of SHAPE to RNA function and evolutionStandardization of RNA chemical mapping experimentsHiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresisDirect updating of an RNA base-pairing probability matrix with marginal probability constraintsSeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.Computational analysis of RNA structures with chemical probing data.Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data.Classification of RNA structure change by 'gazing' at experimental data.Consistent global structures of complex RNA states through multidimensional chemical mapping.The centrality of RNA for engineering gene expressionThe mutate-and-map protocol for inferring base pairs in structured RNA.Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.A two-dimensional mutate-and-map strategy for non-coding RNA structure.High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states.In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus.SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.SHAPE-Seq: High-Throughput RNA Structure Analysis.SHAPE analysis of the RNA secondary structure of the Mouse Hepatitis Virus 5' untranslated region and N-terminal nsp1 coding sequencesRNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.Probing Retroviral and Retrotransposon Genome Structures: The "SHAPE" of Things to Come.Small Molecule-Based Pattern Recognition To Classify RNA Structure.Quantitative dimethyl sulfate mapping for automated RNA secondary structure inference.An RNA Mapping DataBase for curating RNA structure mapping experiments.Database proton NMR chemical shifts for RNA signal assignment and validation.Ensemble analysis of primary microRNA structure reveals an extensive capacity to deform near the Drosha cleavage site.Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.Highly conserved RNA pseudoknots at the Gag-Pol junction of HIV-1 suggest a novel mechanism of -1 ribosomal frameshiftingCapturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.Progress and outlook in structural biology of large viral RNAs.Physics-based RNA structure prediction.Decoding the RNA structurome.RNA structure through multidimensional chemical mapping.RNA secondary structure modeling at consistent high accuracy using differential SHAPE.RNA structure inference through chemical mapping after accidental or intentional mutations.Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domainPackaging of Mason-Pfizer monkey virus (MPMV) genomic RNA depends upon conserved long-range interactions (LRIs) between U5 and gag sequences.Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).Ultraviolet shadowing of RNA can cause significant chemical damage in seconds.
P2860
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P2860
Understanding the errors of SHAPE-directed RNA structure modeling.
description
2011 nî lūn-bûn
@nan
2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Understanding the errors of SHAPE-directed RNA structure modeling.
@ast
Understanding the errors of SHAPE-directed RNA structure modeling.
@en
Understanding the errors of SHAPE-directed RNA structure modeling.
@nl
type
label
Understanding the errors of SHAPE-directed RNA structure modeling.
@ast
Understanding the errors of SHAPE-directed RNA structure modeling.
@en
Understanding the errors of SHAPE-directed RNA structure modeling.
@nl
prefLabel
Understanding the errors of SHAPE-directed RNA structure modeling.
@ast
Understanding the errors of SHAPE-directed RNA structure modeling.
@en
Understanding the errors of SHAPE-directed RNA structure modeling.
@nl
P2093
P2860
P356
P1433
P1476
Understanding the errors of SHAPE-directed RNA structure modeling.
@en
P2093
Christopher C VanLang
Pablo Cordero
Wipapat Kladwang
P2860
P304
P356
10.1021/BI200524N
P407
P50
P577
2011-08-25T00:00:00Z