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Automated electron-density sampling reveals widespread conformational polymorphism in proteins

Automated electron-density sampling reveals widespread conformational polymorphism in proteins

http://www.wikidata.org/entity/Q34283536

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Doing molecular biophysics: finding, naming, and picturing signal within complexity Crystallographic model validation: from diagnosis to healing Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis Hidden alternative structures of proline isomerase essential for catalysis Backdoor opening mechanism in acetylcholinesterase based on X-ray crystallography and molecular dynamics simulations Cyclic AMP regulation of protein lysine acetylation in Mycobacterium tuberculosis Spatial distribution of radiation damage to crystalline proteins at 25–300 K Accessing protein conformational ensembles using room-temperature X-ray crystallography Domain Flexibility Modulates the Heterogeneous Assembly Mechanism of Anthrax Toxin Protective Antigen Automated identification of functional dynamic contact networks from X-ray crystallography Protein structural ensembles are revealed by redefining X-ray electron density noise Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR Extremely Elevated Room-Temperature Kinetic Isotope Effects Quantify the Critical Role of Barrier Width in Enzymatic C–H Activation Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery Invariom refinement of a new monoclinic solvate of thiostrepton at 0.64 Å resolution Keep on moving: discovering and perturbing the conformational dynamics of enzymes Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction Long-range intra-protein communication can be transmitted by correlated side-chain fluctuations alone Flexible backbone sampling methods to model and design protein alternative conformations A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models.Conformational and connotational heterogeneity: a surprising relationship between protein structural flexibility and puns.Understanding the physical basis for the side-chain conformational preferences of methionine.Quantifying side-chain conformational variations in protein structure Alternate states of proteins revealed by detailed energy landscape mapping Mining electron density for functionally relevant protein polysterism in crystal structures.Rotamer decomposition and protein dynamics: efficiently analyzing dihedral populations from molecular dynamics.Resolution of structural heterogeneity in dynamic crystallography.PLoS Computational Biology conference postcards from ISMB 2010 Improved crystallographic structures using extensive combinatorial refinement DNA conformational transitions inferred from re-evaluation of m|Fo| - D|Fc| electron-density maps.Single particle electron cryo-microscopy of a mammalian ion channel.Multiscale conformational heterogeneity in staphylococcal protein a: possible determinant of functional plasticity Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites.E pluribus unum, no more: from one crystal, many conformations.One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites.Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.The role of atomic level steric effects and attractive forces in protein folding EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.

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P2860

Automated electron-density sampling reveals widespread conformational polymorphism in proteins

http://www.wikidata.org/entity/Q34283536

description

2010 nî lūn-bûn

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2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հուլիսին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

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2010年论文

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name

Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Automated electron-density sam ...... ional polymorphism in proteins

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Protein Science

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Automated electron-density sam ...... ional polymorphism in proteins

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Ho-Leung Ng

http://www.w3.org/2001/XMLSchema#string

James M Holton

http://www.w3.org/2001/XMLSchema#string

Mark Sales

http://www.w3.org/2001/XMLSchema#string

Nathaniel Echols

http://www.w3.org/2001/XMLSchema#string

P Therese Lang

http://www.w3.org/2001/XMLSchema#string

Tom Alber

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P2860

Crystal structures of myoglobin-ligand complexes at near-atomic resolution.

The 1.0 A crystal structure of Ca(2+)-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity

Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids

Ensemble Refinement of Protein Crystal Structures: Validation and Application

Intrinsic motions along an enzymatic reaction trajectory

Hidden alternative structures of proline isomerase essential for catalysis

Enhancement of protein stability by the combination of point mutations in T4 lysozyme is additive

Coot: model-building tools for molecular graphics

Macromolecular TLS refinement in REFMAC at moderate resolutions

UCSF Chimera--a visualization system for exploratory research and analysis

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1420-1431

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10.1002/PRO.423

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7

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19

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20499387

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2974833

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