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CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fieldsTwo arginine residues suppress the flexibility of nucleosomal DNA in the canonical nucleosome coreDistinct Roles of Histone H3 and H2A Tails in Nucleosome Stability.An advanced coarse-grained nucleosome core particle model for computer simulations of nucleosome-nucleosome interactions under varying ionic conditionsCharacterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations.Heat conductivity of DNA double helixThe relationship between curvature, flexibility and persistence length in the tropomyosin coiled-coilRole of microscopic flexibility in tightly curved DNA.Speed of conformational change: comparing explicit and implicit solvent molecular dynamics simulationsThe role of histone tails in the nucleosome: a computational study.Emerging methods for ensemble-based virtual screening.Apoptotic lymphocytes of H. sapiens lose nucleosomes in GC-rich promoters.Unwrapping of nucleosomal DNA ends: a multiscale molecular dynamics studyCoupling between Histone Conformations and DNA Geometry in Nucleosomes on a Microsecond Timescale: Atomistic Insights into Nucleosome FunctionsRefinement of Generalized Born Implicit Solvation Parameters for Nucleic Acids and Their Complexes with Proteins.Nucleosome disassembly intermediates characterized by single-molecule FRET.Molecular modeling of nucleic Acid structure: electrostatics and solvation.Dissecting DNA-histone interactions in the nucleosome by molecular dynamics simulations of DNA unwrapping.Introducing Charge Hydration Asymmetry into the Generalized Born Model.Evaluation of DNA Force Fields in Implicit Solvation.Partially Assembled Nucleosome Structures at Atomic Detail.Relaxation dynamics of nucleosomal DNA.DNA mutation motifs in the genes associated with inherited diseases.Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles.DNA bending propensity in the presence of base mismatches: implications for DNA repair.Codons support the maintenance of intrinsic DNA polymer flexibility over evolutionary timescalesModeling DNA-bending in the nucleosome: role of AA periodicity.Conformational preferences of DNA in reduced dielectric environments.The propensity for tropomyosin twisting in the presence and absence of F-actin.Atomic force microscopy imaging of SWI/SNF action: mapping the nucleosome remodeling and sliding.Asymmetric breathing motions of nucleosomal DNA and the role of histone tails.Understanding the Relative Flexibility of RNA and DNA Duplexes: Stretching and Twist-Stretch Coupling.Treecode-based generalized Born method.Towards quantitative analysis of gene regulation by enhancers.Pulling of double-stranded DNA by atomic force microscopy: a simulation in atomistic details
P2860
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P2860
description
2006 nî lūn-bûn
@nan
2006 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
A computational study of nucleosomal DNA flexibility
@ast
A computational study of nucleosomal DNA flexibility
@en
type
label
A computational study of nucleosomal DNA flexibility
@ast
A computational study of nucleosomal DNA flexibility
@en
prefLabel
A computational study of nucleosomal DNA flexibility
@ast
A computational study of nucleosomal DNA flexibility
@en
P2860
P1433
P1476
A computational study of nucleosomal DNA flexibility
@en
P2093
Alexey Onufriev
Jory Z Ruscio
P2860
P304
P356
10.1529/BIOPHYSJ.106.082099
P407
P577
2006-08-04T00:00:00Z