Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles.
about
Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen dockingThe RosettaDock server for local protein-protein dockingMolecular docking as a popular tool in drug design, an in silico travelA Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its FamilySnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology modelsServerification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)RosettaBackrub--a web server for flexible backbone protein structure modeling and designThe role of dynamic conformational ensembles in biomolecular recognitionStructure-based inhibition of protein-protein interactions.PyRosetta: a script-based interface for implementing molecular modeling algorithms using RosettaPractically useful: what the Rosetta protein modeling suite can do for youHuman and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.Monte Carlo replica-exchange based ensemble docking of protein conformations.Osmolytes modulate conformational exchange in solvent-exposed regions of membrane proteins.Identification of structural mechanisms of HIV-1 protease specificity using computational peptide docking: implications for drug resistance.Discriminating binding mechanisms of an intrinsically disordered protein via a multi-state coarse-grained model.Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27Genetic manipulation of the cardiac mitochondrial phosphate carrier does not affect permeability transition.Benchmarking and analysis of protein docking performance in Rosetta v3.2.Accelerating protein docking in ZDOCK using an advanced 3D convolution libraryA generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19Mechanism of polyubiquitin chain recognition by the human ubiquitin conjugating enzyme Ube2g2Computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin.Rational engineering of a human anti-dengue antibody through experimentally validated computational docking.Human germline antibody gene segments encode polyspecific antibodies.FiberDock: Flexible induced-fit backbone refinement in molecular docking.Analysis and modeling of the variable region of camelid single-domain antibodies.Structure-based virtual screening for drug discovery: principles, applications and recent advances.Protein-protein docking with dynamic residue protonation statesThe Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins.Developing a comparative docking protocol for the prediction of peptide selectivity profiles: investigation of potassium channel toxins.IBC's 22nd Annual Antibody Engineering and 9th Annual Antibody Therapeutics International Conferences and the 2011 Annual Meeting of The Antibody Society, December 5-8, 2011, San Diego, CA.Discovery of small molecule inhibitors of MyD88-dependent signaling pathways using a computational screenRapid calculation of protein pKa values using Rosetta.Virtual interactomics of proteins from biochemical standpoint.Computer-aided antibody design.A flexible-protein molecular docking study of the binding of ruthenium complex compounds to PIM1, GSK-3β, and CDK2/Cyclin A protein kinases.Nitric oxide synthase domain interfaces regulate electron transfer and calmodulin activation.Microsecond Molecular Dynamics Simulations of Influenza Neuraminidase Suggest a Mechanism for the Increased Virulence of Stalk-Deletion Mutants.InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.
P2860
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P2860
Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Conformer selection and induce ...... mputational and NMR ensembles.
@en
type
label
Conformer selection and induce ...... mputational and NMR ensembles.
@en
prefLabel
Conformer selection and induce ...... mputational and NMR ensembles.
@en
P2860
P1476
Conformer selection and induce ...... mputational and NMR ensembles.
@en
P2093
Sidhartha Chaudhury
P2860
P304
P356
10.1016/J.JMB.2008.05.042
P407
P577
2008-05-24T00:00:00Z