Theoretical methods for the simulation of nucleic acids.
about
Molecular dynamics simulations of sarcin-ricin rRNA motif.A dynamic structural model of expanded RNA CAG repeats: a refined X-ray structure and computational investigations using molecular dynamics and umbrella sampling simulations.Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformersHeat conductivity of DNA double helixData mining of molecular dynamics trajectories of nucleic acids.Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.Methods to enable the design of bioactive small molecules targeting RNA.Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EMStructure and properties of DNA in apolar solvents.Toward a consensus view of duplex RNA flexibilityMolecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) stepsMolecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosomeInduced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.Comparative molecular modeling study of Arabidopsis NADPH-dependent thioredoxin reductase and its hybrid protein.Ion distributions around left- and right-handed DNA and RNA duplexes: a comparative study.NAFlex: a web server for the study of nucleic acid flexibility.Prechemistry versus preorganization in DNA replication fidelity.Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNAConformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.Mesoscopic modeling for nucleic acid chain dynamics.Parmbsc1: a refined force field for DNA simulations.Determining promoter location based on DNA structure first-principles calculationsBridging the gap between theory and experiment to derive a detailed understanding of hammerhead ribozyme catalysis.Exploring the role of large conformational changes in the fidelity of DNA polymerase betaTowards a molecular dynamics consensus view of B-DNA flexibilitySpectroscopic and molecular dynamics evidence for a sequential mechanism for the A-to-B transition in DNA.Exploring the suitability of coarse-grained techniques for the representation of protein dynamics.Molecular dynamics simulations and their application to four-stranded DNA.Ion motions in molecular dynamics simulations on DNA.Why nature really chose phosphate.Computer simulation study of probe-target hybridization in model DNA microarrays: effect of probe surface density and target concentration.Development of CHARMM polarizable force field for nucleic acid bases based on the classical Drude oscillator modelComputer simulation study of molecular recognition in model DNA microarrays.Evaluation of DNA Force Fields in Implicit Solvation.Twenty-five years of nucleic acid simulationsExploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?Reparameterization of RNA chi Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine.The relative flexibility of B-DNA and A-RNA duplexes: database analysis.
P2860
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P2860
Theoretical methods for the simulation of nucleic acids.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
2003年论文
@zh
2003年论文
@zh-cn
name
Theoretical methods for the simulation of nucleic acids.
@ast
Theoretical methods for the simulation of nucleic acids.
@en
type
label
Theoretical methods for the simulation of nucleic acids.
@ast
Theoretical methods for the simulation of nucleic acids.
@en
prefLabel
Theoretical methods for the simulation of nucleic acids.
@ast
Theoretical methods for the simulation of nucleic acids.
@en
P2860
P356
P1476
Theoretical methods for the simulation of nucleic acids
@en
P2093
F Javier Luque
Modesto Orozco
P2860
P304
P356
10.1039/B207226M
P577
2003-11-01T00:00:00Z