Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities - Test2 - elhamkhani - TriplyDB

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

http://www.wikidata.org/entity/Q29301030

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Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update The incredible shrinking world of DNA microarrays DNA-binding and -bending activities of SAP30L and SAP30 are mediated by a zinc-dependent module and monophosphoinositides UniPROBE: an online database of protein binding microarray data on protein-DNA interactions Detecting microRNA binding and siRNA off-target effects from expression data Dry and wet approaches for genome-wide functional annotation of conventional and unconventional transcriptional activators Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes Affinity regression predicts the recognition code of nucleic acid–binding proteins Regulation of C. elegans neuronal differentiation by the ZEB-family factor ZAG-1 and the NK-2 homeodomain factor CEH-28 Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins Crowdsourcing biomedical research: leveraging communities as innovation engines A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters High-resolution DNA-binding specificity analysis of yeast transcription factors.De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis Distinguishing direct versus indirect transcription factor-DNA interactions.Specific DNA-binding by apicomplexan AP2 transcription factors Mechanisms of mutational robustness in transcriptional regulation Protein-DNA binding in high-resolution Discovery and characterization of human exonic transcriptional regulatory elements Inferring binding energies from selected binding sites A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation Mapping and analysis of chromatin state dynamics in nine human cell types Annotation of functional variation in personal genomes using RegulomeDB HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants Integrative analysis of 111 reference human epigenomes JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles Diversity and complexity in DNA recognition by transcription factors Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data.CEH-28 activates dbl-1 expression and TGF-β signaling in the C. elegans M4 neuron.Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits.RAP: accurate and fast motif finding based on protein-binding microarray data.

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

http://www.wikidata.org/entity/Q29301030

description

2006 nî lūn-bûn

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2006 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2006 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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Compact, universal DNA microar ...... tor binding site specificities

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Compact, universal DNA microar ...... tor binding site specificities

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Compact, universal DNA microar ...... tor binding site specificities

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Compact, universal DNA microar ...... tor binding site specificities

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Compact, universal DNA microar ...... tor binding site specificities

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Nature Biotechnology

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Compact, universal DNA microar ...... tor binding site specificities

@en

P2093

Aaron M Qureshi

http://www.w3.org/2001/XMLSchema#string

Anthony A Philippakis

http://www.w3.org/2001/XMLSchema#string

Fangxue S He

http://www.w3.org/2001/XMLSchema#string

Martha L Bulyk

http://www.w3.org/2001/XMLSchema#string

Michael F Berger

http://www.w3.org/2001/XMLSchema#string

Preston W Estep

http://www.w3.org/2001/XMLSchema#string

P2860

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

DNA binding site of the growth factor-inducible protein Zif268

Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein.

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules

Transcriptional regulatory code of a eukaryotic genome.

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.

Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

Proteome-scale purification of human proteins from bacteria

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1429-1435

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419856

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10.1038/NBT1246

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11

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24

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2006-09-24T00:00:00Z

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6797037

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1046227460

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16998473

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4419707

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