Identification of direct residue contacts in protein-protein interaction by message passing
about
Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalksProtein 3D structure computed from evolutionary sequence variationSequence co-evolution gives 3D contacts and structures of protein complexesDisentangling direct from indirect co-evolution of residues in protein alignmentsDirect-coupling analysis of residue coevolution captures native contacts across many protein familiesThree-dimensional structures of membrane proteins from genomic sequencingSequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamicsProkaryotic 2-component systems and the OmpR/PhoB superfamilyInferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability ModelsIntegrated analysis of residue coevolution and protein structure in ABC transportersCell fate regulation governed by a repurposed bacterial histidine kinaseFrom residue coevolution to protein conformational ensembles and functional dynamics.Probabilistic grammatical model for helix‐helix contact site classificationUsing Structural Information to Change the Phosphotransfer Specificity of a Two-Component Chemotaxis Signalling ComplexA structural model of anti-anti-σ inhibition by a two-component receiver domain: the PhyR stress response regulatorThe 3.2 Å Resolution Structure of a Receptor:CheA:CheW Signaling Complex Defines Overlapping Binding Sites and Key Residue Interactions within Bacterial Chemosensory ArraysTemporal and evolutionary dynamics of two-component signaling pathwaysCorrelated electrostatic mutations provide a reservoir of stability in HIV proteasePrediction of contact residue pairs based on co-substitution between sites in protein structuresGlobal quantitative modeling of chromatin factor interactionsProtein sectors: statistical coupling analysis versus conservationDeep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and proteaseLarge-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 ChaperonesPrediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lassoStructural constraints identified with covariation analysis in ribosomal RNAProtein structure prediction from sequence variationPconsFold: improved contact predictions improve protein modelsEvaluation of residue-residue contact prediction in CASP10Constructing sequence-dependent protein models using coevolutionary information.Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding mapsPredicting functionally informative mutations in Escherichia coli BamA using evolutionary covariance analysis.Network deconvolution as a general method to distinguish direct dependencies in networksAssessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.Coevolutionary signals across protein lineages help capture multiple protein conformations.Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partnersRecent advances in functional region prediction by using structural and evolutionary information - Remaining problems and future extensionsH2rs: deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments.Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
P2860
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P2860
Identification of direct residue contacts in protein-protein interaction by message passing
description
2008 nî lūn-bûn
@nan
2008 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Identification of direct resid ...... interaction by message passing
@ast
Identification of direct resid ...... interaction by message passing
@en
type
label
Identification of direct resid ...... interaction by message passing
@ast
Identification of direct resid ...... interaction by message passing
@en
prefLabel
Identification of direct resid ...... interaction by message passing
@ast
Identification of direct resid ...... interaction by message passing
@en
P2093
P2860
P3181
P356
P1476
Identification of direct resid ...... interaction by message passing
@en
P2093
H. Szurmant
J. A. Hoch
R. A. White
P2860
P3181
P356
10.1073/PNAS.0805923106
P407
P577
2008-12-30T00:00:00Z