DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale. - Test2 - elhamkhani - TriplyDB

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

http://www.wikidata.org/entity/Q43116314

about

A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation DNA microstructure influences selective binding of small molecules designed to target mixed-site DNA sequences Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers.Importance of the Sequence-Directed DNA Shape for Specific Binding Site Recognition by the Estrogen-Related Receptor.Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.An efficient algorithm for improving structure-based prediction of transcription factor binding sites OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites Absence of a simple code: how transcription factors read the genome Deconvolving the recognition of DNA shape from sequence.cgDNA: a software package for the prediction of sequence-dependent coarse-grain free energies of B-form DNA Protein-DNA binding in the absence of specific base-pair recognition Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy.Operator recognition by the ROK transcription factor family members, NagC and Mlc Evolving insights on how cytosine methylation affects protein-DNA binding.Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED.GBshape: a genome browser database for DNA shape annotations.Quantitative modeling of transcription factor binding specificities using DNA shape.Shapely DNA attracts the right partner.ChIP-nexus enables improved detection of in vivo transcription factor binding footprints.An ancient protein-DNA interaction underlying metazoan sex determination.Survey of protein-DNA interactions in Aspergillus oryzae on a genomic scale Unraveling determinants of transcription factor binding outside the core binding site.Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.The role of structural parameters in DNA cyclization A widespread role of the motif environment in transcription factor binding across diverse protein families High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins Molecular mechanisms of ribosomal protein gene coregulation.ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.Exploring comprehensive within-motif dependence of transcription factor binding in Escherichia coli.Affinity and competition for TBP are molecular determinants of gene expression noise.A DNA shape-based regulatory score improves position-weight matrix-based recognition of transcription factor binding sites.Onco-Regulon: an integrated database and software suite for site specific targeting of transcription factors of cancer genes.How motif environment influences transcription factor search dynamics: Finding a needle in a haystack Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.Covariation between homeodomain transcription factors and the shape of their DNA binding sites Evaluating the impact of single nucleotide variants on transcription factor binding.Genome-wide uniformity of human 'open' pre-initiation complexes.Quantitative modeling of gene expression using DNA shape features of binding sites.TFBSshape: a motif database for DNA shape features of transcription factor binding sites

P2860

Q28548172-16D4C39F-3E56-4ECC-8344-76E3CB6D8BF4 Q28552633-9ECE749B-A30F-4B72-981D-CBF9BA0524AE Q33554133-BFA94F31-F6BD-4A25-B899-AA2B5DDE1C18 Q33723246-43FD8B77-AAB9-4497-B79B-1E4B20EE4A13 Q33813823-B239230C-579F-4600-8B4B-168BE09DC954 Q33826057-9FE0B796-CF5A-4EA0-8A03-F628391B11DF Q33913159-9A98F7D4-A2B1-432B-AB71-9026E70222B9 Q34039084-9791961D-48FD-4A31-95F7-71909444E598 Q34111752-1FB043EE-52CC-497E-BCF7-8959B20D0550 Q34470344-8501103E-169F-4E4A-8C59-9A352623D7C0 Q34489622-A1A9CF04-0080-4E88-8CD1-71B203112AE9 Q34661144-3801F5ED-1AD2-451D-9D72-53D66E34E2C4 Q34667406-2F9D172B-B53D-4311-8E5B-9DC82C630AC3 Q34883126-C14D28C0-4C07-4B1B-B7C5-38E8296CCF3D Q35003119-6AE0685B-86B9-471E-B781-A15D151F79E2 Q35131055-6F2D1DFF-9563-4E78-B5AC-8DF6267EDE44 Q35254905-AFC415DB-AADF-44DF-9D18-CA12F760B486 Q35485439-76BC9185-853F-4FE3-8415-B210B900EC9F Q35485840-0323F43C-E85D-4596-B9C5-8FC828C3E06B Q35573558-4A851FB3-C08B-4956-9A33-4A14A6959F6C Q35764815-5176CD48-87AF-4DAE-9244-7B9F153AC337 Q35786148-72FBD780-8712-40C3-AFC1-1E9FDA0AD354 Q35793479-5A679A9F-92D5-4C2F-932A-E5A9033C36BC Q35872726-E6F6A1AE-B28E-4CD1-909A-7EDCAE504D43 Q35914822-BE6A2CB8-14DC-4199-802D-5C805AABD294 Q36032482-D253D022-7BF9-4E1E-833A-95DB536FBA40 Q36035868-0B9AB791-4361-4525-A0B1-2CDB237E35A1 Q36084323-9FB73076-1D42-4151-9B3C-45C100E8F9D5 Q36200857-51CF030C-7B1E-4A8C-8B40-27C5F577723D Q36305857-EE11AF28-9A6C-413D-8050-832856ECBF76 Q36542390-0D65F069-9C67-4342-B3E8-F93874E58F7A Q36817044-AD198DDB-AADB-41D7-A127-D7FB989F2DC2 Q37166444-DAE05E30-F546-42F2-9F2D-5E0C6B532043 Q37255786-E46634D5-0257-4B23-8DB3-E3D1B338C1FE Q37260808-9F4AC273-2C11-43FD-9E9B-0891EF1C3362 Q37417019-2D08900F-DD2A-4E14-B29D-3499C9CF0675 Q37472956-988DE550-6C1F-41E1-BA54-B77956A4638C Q37548484-9FB3EB39-BAF1-4F7E-8373-994FA638EF64 Q37623767-9F04EE83-A8F9-46FF-8629-C4DF298A0F69 Q37661734-8F67E5CE-922B-4B17-A77B-57B09A71D290

P2860

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.

http://www.wikidata.org/entity/Q43116314

description

2013 nî lūn-bûn

@nan

2013年の論文

@ja

2013年学术文章

@wuu

2013年学术文章

@zh

2013年学术文章

@zh-cn

2013年学术文章

@zh-hans

2013年学术文章

@zh-my

2013年学术文章

@zh-sg

2013年學術文章

@yue

2013年學術文章

@zh-hant

name

DNAshape: a method for the hig ...... l features on a genomic scale.

@en

DNAshape: a method for the hig ...... l features on a genomic scale.

@nl

type

label

DNAshape: a method for the hig ...... l features on a genomic scale.

@en

DNAshape: a method for the hig ...... l features on a genomic scale.

@nl

prefLabel

DNAshape: a method for the hig ...... l features on a genomic scale.

@en

DNAshape: a method for the hig ...... l features on a genomic scale.

@nl

P1433

Q43116314-9FE57136-60A2-4F70-9570-6C5184E41E18

P1476

Q43116314-9F622378-9F8B-46C6-8C9B-8E8FA16CE293

P2093

Q43116314-11147044-28E4-4A1A-B208-D83BC0D150A2

Q43116314-225D6A8B-2384-4E74-9EE2-52D5B5579C19

Q43116314-24A45979-8751-4163-B572-FC2D0ACDB2F4

Q43116314-8A87DF81-BF30-4C26-BC8F-FBD70E3CBCD5

Q43116314-9869E07A-D4E2-4493-B373-B6E796423ACF

Q43116314-A9DCC0A5-0D4F-4C5F-9961-B420A86B57ED

P2860

Q43116314-0142CA6C-F8E7-4CB4-B267-2F594C538B18

Q43116314-02265197-CB92-401E-96B6-7D92EBEEDBAF

Q43116314-07D5A6CB-DC80-420D-B5FA-0811C03FE6DA

Q43116314-0D93930B-B9C0-4EAB-809A-7FE64B2F6B74

Q43116314-1705E50D-293F-486E-8677-C776CB114AF2

Q43116314-1C6AE80F-D3C7-467D-8EA9-F2F5C61362E1

Q43116314-276689DB-B904-4ED5-9992-23D2E0825785

Q43116314-2F0A2872-C6F1-4C40-BAF8-79EF4E1C3D01

Q43116314-48A60331-399D-4F56-A03A-71D5E8B28608

Q43116314-4BB1E680-F07B-4DEF-A7E2-CEBA56D9679B

P304

Q43116314-0280A969-09E1-4097-8A71-4ACFBD6D6042

P31

Q43116314-0E86069D-8385-478E-9CF3-8B56A1AE2DA9

P356

Q43116314-958DC1FB-8384-4ED1-99E9-C2DFB132BE80

P407

Q43116314-282B84A3-A08D-45DA-8554-318D83E7D56D

P433

Q43116314-5F7D9F8D-F0D0-476D-AA19-1EF024271D24

P478

Q43116314-DF2C1E43-5B35-48A7-9B90-6E1E2BAD75C2

P50

Q43116314-A44B68E9-55ED-4E6D-8D55-9A4B00CFBC38

Q43116314-A6EBE972-D11C-47B2-84BD-735148548BC5

P577

Q43116314-9BBDDB83-B39E-44DB-9FEA-1344963B18A9

P5875

Q43116314-2332ED21-AFFB-4C32-9049-ECB419E88BA0

P698

Q43116314-2E5B1595-2833-4BC4-ACAE-9AB2942A092E

P932

Q43116314-2BF44194-2FB7-4123-9CA7-342E6685005D

P356

P1433

Nucleic Acids Research

P1476

DNAshape: a method for the hig ...... al features on a genomic scale

@en

P2093

Ana Carolina Dantas Machado

http://www.w3.org/2001/XMLSchema#string

Iris Dror

http://www.w3.org/2001/XMLSchema#string

Lin Yang

http://www.w3.org/2001/XMLSchema#string

Remo Rohs

http://www.w3.org/2001/XMLSchema#string

Tahereh Ghane

http://www.w3.org/2001/XMLSchema#string

Tianyin Zhou

http://www.w3.org/2001/XMLSchema#string

P2860

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

The role of DNA shape in protein-DNA recognition

Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations

Overall structure and sugar dynamics of a DNA dodecamer from homo- and heteronuclear dipolar couplings and 31P chemical shift anisotropy

Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

Mechanism of Origin DNA Recognition and Assembly of an Initiator-Helicase Complex by SV40 Large Tumor Antigen

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

Defining the structure of irregular nucleic acids: conventions and principles

P304

W56-62

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1093/NAR/GKT437

http://www.w3.org/2001/XMLSchema#string

P407

P433

Web Server issue

http://www.w3.org/2001/XMLSchema#string

P478

41

http://www.w3.org/2001/XMLSchema#string

P50

P577

2013-05-22T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

236908162

http://www.w3.org/2001/XMLSchema#string

P698

23703209

http://www.w3.org/2001/XMLSchema#string

P932

3692085

http://www.w3.org/2001/XMLSchema#string