A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation - Wikidata - wikimedia - TriplyDB

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

http://www.wikidata.org/entity/Q35127973

about

RNAstructure: software for RNA secondary structure prediction and analysis PARTS: probabilistic alignment for RNA joinT secondary structure prediction Salt dependence of nucleic acid hairpin stability Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign Thermodynamic characterization of tandem mismatches found in naturally occurring RNA NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions RNA secondary structure analysis using RNAstructure Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.Exploring ribozyme conformational changes with X-ray crystallography.NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.Thermodynamic characterization of naturally occurring RNA tetraloops Non-nearest-neighbor dependence of stability for group III RNA single nucleotide bulge loops Using the RNAstructure Software Package to Predict Conserved RNA Structures Thermodynamic characterization of RNA triloops MELTING, a flexible platform to predict the melting temperatures of nucleic acids Positional and neighboring base pair effects on the thermodynamic stability of RNA single mismatches Computational approaches for RNA energy parameter estimation Non-nearest-neighbor dependence of the stability for RNA group II single-nucleotide bulge loops.Structural characterization of naturally occurring RNA single mismatches.The size of the internal loop in DNA hairpins influences their targeting with partially complementary strands Effects of non-nearest neighbors on the thermodynamic stability of RNA GNRA hairpin tetraloops.Stability of single-nucleotide bulge loops embedded in a GAAA RNA hairpin stem.RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data Capillary electrophoresis is a sensitive monitor of the hairpin-random coil transition in DNA oligomers.Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA.Thermodynamic characterization of RNA 2 × 3 nucleotide internal loops.OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.Detecting and comparing non-coding RNAs in the high-throughput era Improved RNA secondary structure prediction by maximizing expected pair accuracy RNA secondary structure prediction.Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.RNA Secondary Structure Prediction.Bridging the gap between in vitro and in vivo RNA folding.High-throughput thermal stability assessment of DNA hairpins based on high resolution melting.Large deviations for random trees and the branching of RNA secondary structures Conversion of stable RNA hairpin to a metastable dimer in frozen solution.Thermodynamics and folding pathway of tetraloop receptor-mediated RNA helical packing

P2860

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P2860

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

http://www.wikidata.org/entity/Q35127973

description

2006 nî lūn-bûn

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2006 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2006 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

A set of nearest neighbor para ...... secondary structure formation

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A set of nearest neighbor para ...... secondary structure formation

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A set of nearest neighbor para ...... secondary structure formation

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David H Mathews

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Zhi John Lu

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P2860

Mfold web server for nucleic acid folding and hybridization prediction

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

A statistical analysis of RNA folding algorithms through thermodynamic parameter perturbation

Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures

NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs

Molecular recognition in purine-rich internal loops: thermodynamic, structural, and dynamic consequences of purine for adenine substitutions in 5'(rGGCAAGCCU)2

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

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10.1093/NAR/GKL472

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17

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34

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Douglas H. Turner

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6810994

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16982646

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nearest neighbour algorithm

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1635246

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