A Future Vision for PLOS Computational BiologyA computer vision based technique for 3-D sequence-independent structural comparison of proteinsConformational study of the protegrin-1 (PG-1) dimer interaction with lipid bilayers and its effectFast algorithm for predicting the secondary structure of single-stranded RNAHydrophobic folding units derived from dissimilar monomer structures and their interactionsPatchDock and SymmDock: servers for rigid and symmetric docking.SiteEngines: recognition and comparison of binding sites and protein-protein interfacesPRISM: protein interactions by structural matchingPrinciples and Overview of Sampling Methods for Modeling Macromolecular Structure and DynamicsPrinciples of allosteric interactions in cell signalingAllostery in disease and in drug discoveryStructure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive reviewRegulating highly dynamic unstructured proteins and their coding mRNAsAllosteric effects of the oncogenic RasQ61L mutant on Raf-RBDFolding funnels and conformational transitions via hinge-bending motionsClose-range electrostatic interactions in proteinsExtended disordered proteins: targeting function with less scaffoldPrinciples of docking: An overview of search algorithms and a guide to scoring functionsHingeProt: automated prediction of hinges in protein structuresMolecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulationsProtein folding and function: the N-terminal fragment in adenylate kinase.The role of response elements organization in transcription factor selectivity: the IFN-β enhanceosome exampleA unified view of "how allostery works"The structural pathway of interleukin 1 (IL-1) initiated signaling reveals mechanisms of oncogenic mutations and SNPs in inflammation and cancerAllostery: An Overview of Its History, Concepts, Methods, and ApplicationsFrom "What Is?" to "What Isn't?" Computational BiologyA Review of 2011 for PLoS Computational BiologyMolecular surface representations by sparse critical pointsFamilial Alzheimer's disease Osaka mutant (ΔE22) β-barrels suggest an explanation for the different Aβ1-40/42 preferred conformational states observed by experiment.All-d-Enantiomer of β-Amyloid Peptide Forms Ion Channels in Lipid Bilayers.β-Barrel topology of Alzheimer's β-amyloid ion channels.Hierarchical protein folding pathways: a computational study of protein fragments.Protein structure prediction via combinatorial assembly of sub-structural units.Recognition of functional sites in protein structures.A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly.A hierarchical protein folding scheme based on the building block folding model.Algorithms for multiple protein structure alignment and structure-derived multiple sequence alignment.Constructing templates for protein structure prediction by simulation of protein folding pathways.Prediction of interacting single-stranded RNA bases by protein-binding patternsAllostery without a conformational change? Revisiting the paradigm.
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P1006
P214
P1006
P21
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P31
P551
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P7859
lccn-n2006180276